species:   Fugra
pid:       PID0988
parent:    FgmilR-7dps-05
paralog:   
locus:     NC_026474.1:3094597-3094695
matures:   ['UUGGCAGCUGAGAAAAAGAAUAG', 'CUUUUUUUUCUUCCUGUUU']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:3094597-3094695

0 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

        *************************                                      *********************       
AGUGAAGGAAUUGGCAGCUGAGAAAAAGAAUAGAUUCAAAAAGCGAAAUACCAGUAAAGGUCUUUUUGAUUCACUUUUUUUUCUUCCUGUUUCUUUCCU
((.(((((((...((((..(((((((((((..((.((((((((......(((......))))))))))).))..))))))))))).)))))))))))))
----------UUGGCAGCUGAGAAAAAGAAUAG------------------------------------------------------------------ l=23 a=2 c
-------------------------------------------------------------------------CUUUUUUUUCUUCCUGUUU------- l=19 a=0 c*
----------UUGGCAGCUGAGAAAAAGAAUAG------------------------------------------------------------------ l=23 a=2 ma
-------------------------------------------------------------------------CUUUUUUUUCUUCCUGUUU------- l=19 a=0 ma*

----------UUGGCAGCUGAGAAAAAGAAU-------------------------------------------------------------------- l=21 a=1 
----------UUGGCAGCUGAGAAAAAGAAUA------------------------------------------------------------------- l=22 a=1 
----------UUGGCAGCUGAGAAAAAGAAUAG------------------------------------------------------------------ l=23 a=2 (c,ma)
----------UUGGCAGCUGAGAAAAAGAAUAGAU---------------------------------------------------------------- l=25 a=1 

mb-01011
ax-1011011
ku-01
ss-101111111010
fn-011
